Progeny Software - Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database. MuStaR Sequence Variant Database Software - Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being maintained. Hands on Genetics - Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Freeware for Mac and Windows. Alice Software - Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields. Genetic Linkage Analysis - Offers links and other resources for genetic analysis software from the Rockefeller University. GENtle - GPL software for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German). MapMakerDrawer - Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence. Genetic Network Maps as Java Applets - Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net. CREME: Cis-REgulatory Module Explorer - Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a resource for decoding microarray experiments. Broad Institute Genetics Software - Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection. The Sequence Manipulation Suite - The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing. GeneSifter - Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format. PyMoods - A software application for visualizing genomic data. Can be used to analyze and display relations between complete genomes, genomic fragments, proteins, ESTs, full length cDNAs, and gene expression data. BioConstructor Molecular Cloning Software - BioConstructor is a bioinformatics solution focussing on molecular cloning. Runs on Windows, Mac OS X, Linux. CounterTrace II DNA Sequencing - Software and reagent for improving the quality and read length of DNA sequence traces collected on the ABI 3730 DNA sequencer. Seqool - Free Windows software tool for the analysis of DNA and RNA sequences. It includes several sequence statistics and a comprehensive set of signal search methods. Phenosystems - Software company developing user friendly tools for the molecular genetics community. Provides details of products, R and D collaborations and news. OpenBiomind - OpenBiomind is an open source toolkit for analysis of gene expression, SNP and other biological datasets using advanced machine learning and pattern mining techniques, and includes traditional clustering, hybrid clustering, and other techniques. Gene Expression Open Source System - Open source database and analysis package used to store and analyze gene expression data. Includes microarray center workflow management, and researcher tools to analyze final data. STRand - Open-source program, provided by Davis' Veterinary Genetics Lab at the University of California, to automate or speed up the analysis of DNA fragment length polymorphism samples. HyPhy: Hypothesis Testing Using Phylogenies - Free multiplatform software package intended to perform maximum likelihood analyses of genetic sequence data. Random Genetic Optimization - Genetic algorithms are a new approach to modeling based on the evolution theory in biology and use concepts such as population, descendant, parents, mutations, chromosomes, genes, etc. CellProfiler - Open source image analysis software designed for biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.