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Sites offering or presenting software to be used in research on the processes related to the central dogma of molecular biology: transcription from DNA to mRNA, splicing, translation to polypeptides, processing of the polypeptides (specific proteolysis, conjugation to carbohydrates, lipids and prosthetic groups) and the control mechanisms involved.
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Premier Biosoft International - Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics. Chang Bioscience - Microarray analysis, lab inventory, and primer sequence database tools from San Francisco, California. Oligo Software - Consensus, multiplex and degenerate primers, oligonucleotide database, secondary structure and difficult sequencing for researchers in PCR and related technologies. Developed since 1989, by Molecular Biology Insights Inc. Redasoft Corp. - Makers of restriction enzyme database program, to design cloning experiments and produce high resolution graphics of plasmid maps and alignments. Includes corporate details of company in Bradford, Ontario. Gene Kinetics - Software for transcription and cell cycle genes, providing peak intervals, max values as a function of decay of gene-activating principle, inhibitory mRNA, gene amplification, anabolic capacity and proteolysis. Improved Outcomes Software Inc. - Offers programs and custom development for the visualization, analysis and classification of gene expression and proteomics data, image-guided surgery and information technology. Based in Inverary, Ontario. Koada Technology - Supplies software for automated analysis and quantification of microarray images. Delila - Software for Analysis of Protein and Nucleic-acid Sequences. DNA Software - Company selling software intended for molecular biology. DNAStar - Develops sequence analysis software for molecular biology. Short Time-series Expression Miner - Freeware for clustering, comparing, and visualizing short time series gene expression data, maintained at Carnegie Mellon University, Pittsburgh. The Ribosome Builder Project - A software project to simulate the ribosome. MB DNA Analysis - Program for statistical analysis and evaluation of the biological significance from microarray data. Includes key features, registration and download for Windows and Linux. Score Comets - Site introducing the comet assay, including equipment needed, hints and tips along with information on the Comet Assay IV software scoring system. Strand Life Sciences Pvt. Ltd. - Develops data analysis and visualization software for microarray gene expression data from its base in Bangalore, India. Qlucore - Supplies software to explore and analyze microarray gene expression data sets, in Lund, Sweden. PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution - PGEToolbox enables population genetists to manipulate DNA polymorphism sequences and SNPs, compute basic statistics of sequence variation, and carry out neutrality tests. AiO - Downloadable package integrating database, oligo ordering, DNA and protein analysis programs from Konstanz, Germany. RNAdraw - A program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. VisuMap - VisuMap helps to viusalize and undertstand high dimensional by a collection of clustering and mapping algorithms, and many dynamically linked data views. Nucleic Acid and Protein Sequence Analysis Software - From the Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, USA. Advaita Bioinformatics - Developer of gene pathway analysis software for analysis of genes, ontology, pathways, miRNAs, diseases, SNPs, and drugs. Provide information about iPathway software technology. Igenbio - Software and services for life science, particularly for microbial genomics, in Chicago, Illinois. Easana GenoSplice - Alternative splicing and transcripts database that gathers several bioinformatic tools aiming to study expression of the human gene products.
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