Cryptology ePrint Archive - At the IACR.
Hopf Topology Archive - Algebraic topology and related areas. (~400 articles)
MGNet Preprints - Multigrid and other methods for PDE simulation. (100+ articles)
K-theory Preprint Archive - K-theory (generalized cohomology theories). (~400 articles)
Mathematical Physics Archive - Also called mp_arc; at UT Austin. (2000- articles)
Conservation Laws Preprint Server - Analysis/simulation of conservative PDEs. (100+ articles)
Banach Space Bulletin Board - Banach spaces/functional analysis. (~400 articles, arXiv overlay)
Optimization Online - A repository of eprints about optimisation and related topics.
Topology Atlas Preprints - Mostly general topology. (400+ articles)
Shelah's Archive - Papers by Saharon Shelah in logic and related. (100s of articles, arXiv mirrored)
Linear Algebraic Groups and Related Structures - Including Azumaya Algebras, Algebras with Involutions, Brauer Groups, Quadratic and Hermitean Forms, Witt Rings, Lie and Jordan Algebras, Homogeneous Varieties. DVI, PS, PDF (~80 items).
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